csvstat: sequence item 0: expected string, int found
Created by: alimanfoo
On a particular file, csvstat got half-way through generating a report when it threw an error...
$ csvstat --tab multiAllele-PF20-1.0.20110701.tab 1. Chr Nulls: No Unique values: 14 5 most frequent values: MAL14: 16683 MAL13: 14670 MAL12: 10112 MAL11: 9020 MAL9: 7160 Max length: 5 2. Pos Nulls: No Min: 12048 Max: 3255686 Sum: 104682476273 Mean: 1009990 Median: 851416 Unique values: 101373 5 most frequent values: 500304: 4 262319: 3 193593: 3 879671: 3 191113: 3 3. PV0002-C Nulls: No sequence item 0: expected string, int found
Here's a sample of the file...
Chr Pos PV0002-C PV0004-C PV0006-C PV0008-C PV0020-C PV0023-C PV0025-C PV0028-C PV0031-C PV0035-C PV0037-C PV0041-C PV0046-C PV0048-C MAL1 91099 0 0 0 0 1 0 0 1 1 0 1 0 1 0 MAL1 91104 0 0 0 0 1 0 0 1 3 3 1 0 1 0 MAL1 93363 1 1 1 1 0 1 0 1 1 1 0 0 1 1 MAL1 93382 1 1 1 1 0 1 0 1 1 1 0 0 1 1 MAL1 93384 1 1 1 1 0 1 0 1 1 1 0 0 1 1 MAL1 93390 1 1 1 1 0 1 0 1 1 1 0 0 1 1 MAL1 93439 1 1 1 1 0 1 0 1 1 1 0 0 1 1 MAL1 93457 1 1 1 1 0 1 0 1 1 1 0 0 1 1 MAL1 94008 1 1 1 1 0 1 0 1 1 1 0 0 1 1